Bootstrap: docker
From: ghcr.io/prefix-dev/pixi:0.49.0

%labels
    Author ATGC
    Tool PairK
    PairK-Commit 7265e5f507065012b2be013e1a0539ee27a7a895

%files
    pairk/pairk-project-7265e5f.tar.gz /opt/pairk-project.tar.gz

%post
    set -eu
    apt-get update
    # Pixi resolves AIUPred from GitHub; GitHub is reachable from ATGC_Tide.
    # PairK itself remains vendored above and never contacts gite.lirmm.fr.
    apt-get install -y --no-install-recommends ca-certificates git
    rm -rf /var/lib/apt/lists/*
    mkdir -p /opt/pairk
    tar -xzf /opt/pairk-project.tar.gz --strip-components=1 -C /opt/pairk
    rm -f /opt/pairk-project.tar.gz
    cd /opt/pairk
    # paths.py generates a C header on every import upstream. Runtime containers
    # are immutable and do not need that database-build-only side effect.
    sed -i '/^### Fichier paths.h/,$d' paths.py
    pixi install --locked
    # Imported by backend/orthogroupe/cli_wrappers.py but absent from the
    # upstream manifest and lock file at the pinned commit.
    pixi add 'psutil==7.2.2'

%environment
    export PATH=/opt/pairk/.pixi/envs/default/bin:$PATH
    export PYTHONPATH=/opt/pairk
    export PYTHONDONTWRITEBYTECODE=1

%test
    test -f /opt/pairk/pipeline.py
    test -x /opt/pairk/.pixi/envs/default/bin/python