Bootstrap: docker
From: continuumio/miniconda3:24.7.1-0

%labels
    Author ATGC
    Tool TFscope-2
    Version 2.0.0rc3

%post
    set -e
    export DEBIAN_FRONTEND=noninteractive
    apt-get update
    apt-get install -y --no-install-recommends git gfortran ca-certificates
    rm -rf /var/lib/apt/lists/*

    git clone --depth 1 --branch v2 https://gite.lirmm.fr/rromero/tfscope.git /opt/tfscope
    cd /opt/tfscope
    test "$(git rev-parse HEAD)" = "f18b443adf6acc419f59ef1c424229d8109a0485"
    conda create -y -n tfscope-scientific-2.0 \
        --override-channels -c conda-forge -c bioconda \
        python=3.10.14 meme=5.5.5 pip=25.1.1
    conda run -n tfscope-scientific-2.0 python -m pip install "setuptools==59.8.0" "numpy==1.26.4"
    conda run -n tfscope-scientific-2.0 python -m pip install --no-build-isolation glmnet==2.2.1
    conda run -n tfscope-scientific-2.0 python -m pip install /opt/tfscope
    conda clean --all --yes

%environment
    export PATH=/opt/conda/envs/tfscope-scientific-2.0/bin:$PATH
    export PYTHONDONTWRITEBYTECODE=1
    export MPLCONFIGDIR=/tmp/matplotlib

%runscript
    exec conda run --no-capture-output -n tfscope-scientific-2.0 tfscope "$@"