Welcome to the ATGC platform
Explore our services, submit your datasets, and follow your analyses through to their final results. The catalog includes both ATGC-owned tools and external tools integrated in TIDE, with source, reference, and bio.tools links when available.
Choose a tool to submit a new analysis. Badges distinguish ATGC-owned developments from external tools integrated in TIDE, and cards expose source/reference plus bio.tools links when available.
Species tree inference from a set of gene trees using ASTRAL-IV or ASTRAL-Pro3 (ASTER).
Sequence similarity search using BLAST
Multiple sequence alignment using the ClustalW 2.1 binary, with FASTA, PHYLIP and CLUSTAL outputs.
Discovery of cis-regulatory long-range elements correlated with gene expression using DExTER.
FastME 2.0: a comprehensive, accurate and fast distance-based phylogeny inference program
Conserved-block selection from an existing multiple sequence alignment, with normalized FASTA and PHYLIP outputs.
Maximum-likelihood phylogeny inference from an aligned sequence file using IQ-TREE 3, with optional ModelFinder, SH-aLRT and ultrafast bootstrap support.
Search for motif occurrences on reference genomes with curated and custom matrices.
Origin
Developed by ATGC (MAB).
Matrix Representation with Parsimony (MRP) supertree inference from two or more Newick trees using PAUP*.
Multiple sequence alignment with MUSCLE 3.8, producing FASTA, CLUSTAL and PHYLIP outputs.
Bayesian phylogeny inference from an aligned FASTA file, with consensus tree and posterior diagnostics.
Maximum-likelihood phylogenetic inference with broad model and optimisation options.
PhySIC_IST supertree inference with optional STC and bootstrap-based correction.
Origin
Developed by ATGC (MAB).
Maximum-likelihood phylogeny inference from an aligned sequence file using RAxML-NG, with optional non-parametric bootstrap support.
Sequence format conversion using BioPython, supporting FASTA, PHYLIP, CLUSTAL and other formats.
Smart Model Selection (SMS) to rank substitution models with optional PhyML inference.
Multiple sequence alignment with T-Coffee, returning aligned FASTA, CLUSTAL, PHYLIP, guide-tree and optional legacy export formats.
TFScope analyses TF binding from positive/negative BED peaks and motif collections to extract discriminative features.
Origin
Developed by ATGC (MAB).
Parsimony phylogeny inference from an aligned FASTA file using TNT 1.6, with strict consensus output.
Render a Newick tree as a lightweight SVG preview suitable for web display.
Origin
Developed by ATGC.
Support & outreach
Integrate our services into your automated pipelines through the REST API. A detailed schematic and sample requests are available to guide your development.